NOTE: In some cases, agencies may wish to provide compensation to employees in a form that is not included in an employee's base pay. The University, acting through the Hiring Department, agrees to bestow upon the Employee the amount of.This Bonus Policy outlines the criteria and process for awarding bonuses to ensure transparency and fairness. This document outlines how agencies will implement the Compensation. Management System and is the foundation for ensuring the consistent. This fact sheet provides general information regarding bonuses and the regular rate of pay under the FLSA for non-exempt employees. A stay bonus agreement is a contract between a company and an employee stating that the employee will not leave the company for a specified period of time. What is a Bonus Plan? A bonus plan is an agreement between the employer and employee to pay out a predetermined amount of money based on performance. Learn how to run a bonus payroll and accurately calculate bonus pay and taxes with our comprehensive small business guide.