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Limitations. The primary limitation of CUT&Tag-seq is the likelihood of over-digestion of DNA due to inappropriate timing of the Magnesium-dependent Tn5 reaction. A similar limitation exists for contemporary ChIP-Seq protocols where enzymatic or sonicated DNA shearing must be optimized.

CUT&Tag, which is short for Cleavage Under Targets and Tagmentation, is a molecular biology method that researchers use to investigate interactions between proteins and DNA and to identify DNA binding sites for their protein of interest.

CUT&Tag, which is short for Cleavage Under Targets and Tagmentation, is a molecular biology method that researchers use to investigate interactions between proteins and DNA and to identify DNA binding sites for their protein of interest.

ATAC-Seq enables researchers to detect the locations of open chromatin, nucleosomes, and occupied transcription factors using adapter-loaded Tn5. CUT&Tag reveals protein-chromatin interactions using a target antibody and adapter-loaded pA-Tn5.

ATAC-Seq enables researchers to detect the locations of open chromatin, nucleosomes, and occupied transcription factors using adapter-loaded Tn5. CUT&Tag reveals protein-chromatin interactions using a target antibody and adapter-loaded pA-Tn5.

CUT&RUN is an in vivo method that uses a target-specific primary antibody and a Protein A-Protein G-Micrococcal Nuclease (pAG-MNase) to isolate specific protein-DNA complexes1,2,3.

Cleavage Under Targets and Tagmentation (CUT&Tag) is a method to investigate genomic localization of histone modifications and some transcription factors that reveals interactions between proteins and DNA or identifies DNA binding sites for proteins of interest.